/EXTERNAL BLUEPRINT/methylation/K012130_1_lane_gembs

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SAMPLE K012130_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 19248161 124557 0.65 %
NonRefCpG 885070 381 0.04 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K012130_1_lane_gembs_coverage_refCpG.png ./IMG//K012130_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K012130_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K012130_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K012130_1_lane_gembs_quality_refcpg.png ./IMG//K012130_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K012130_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4233719 16.19 % 12978 3.92 % 302013 28.00 % 182 9.56 %
Intermediate (0.3-0.7) 8937726 34.19 % 59932 18.10 % 398049 36.90 % 418 21.96 %
Methylated (0.7-1) 12971906 49.62 % 258150 77.98 % 378635 35.10 % 1304 68.49 %
Median Methylation 0.690 0.870 0.540 0.830