/EXTERNAL BLUEPRINT/mapping_coverage/K012120_K012121_K012122_K012123_K012124_K012125_K012126_K012127_K012128_9_lane_gembs
BACK
SAMPLE K012120_K012121_K012122_K012123_K012124_K012125_K012126_K012127_K012128_9_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
163876129 |
100% |
11610460522 |
100% |
| Mapped |
161851929 |
98.76 % |
11456621322 |
98.67 % |
| Passed |
76679317 |
46.79 % |
4983502810 |
42.92 % |
| NotPassed |
85172612 |
51.97 % |
6473118512 |
55.75 % |
| |
|
|
|
|
| LowMAPQ |
40561164 |
24.75 % |
3082648464 |
26.55 % |
| MateUnmapped |
2024200 |
1.24 % |
153839200 |
1.33 % |
| Duplicate |
43025870 |
26.26 % |
3269966120 |
28.16 % |
| BadOrientation |
6 |
0.00 % |
456 |
0.00 % |
| LargeInsertSize |
9290 |
0.01 % |
706040 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
1576282 |
0.96 % |
119797432 |
1.03 % |
| Unmapped |
2024200 |
1.24 % |
153839200 |
1.33 % |
Base Level Counts
| Bases |
# |
% |
| Total |
5482074256 |
100% |
| Passed |
4567095275 |
83.31 % |
| Trimmed |
324950184 |
5.93 % |
| Clipped |
16357537 |
0.30 % |
| Overlapping |
482213909 |
8.80 % |
| LowQuality |
91457351 |
1.67 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |