/EXTERNAL BLUEPRINT/methylation/K012120_K012121_K012122_K012123_K012124_K012125_K012126_K012127_K012128_9_lane_gembs
BACK
SAMPLE K012120_K012121_K012122_K012123_K012124_K012125_K012126_K012127_K012128_9_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
20017456 |
111737 |
0.56 % |
| NonRefCpG |
866047 |
253 |
0.03 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
3657801 |
13.13 % |
7161 |
2.51 % |
292580 |
26.69 % |
114 |
7.22 % |
| Intermediate (0.3-0.7) |
9553621 |
34.30 % |
50668 |
17.77 % |
403941 |
36.86 % |
360 |
22.75 % |
| Methylated (0.7-1) |
14640211 |
52.56 % |
227254 |
79.71 % |
399503 |
36.45 % |
1109 |
70.02 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.720 |
|
0.870 |
|
0.560 |
|
0.830 |
|