/EXTERNAL BLUEPRINT/mapping_coverage/K012034_K012109_29libs_29_lane_gembs
BACK
SAMPLE K012034_K012109_29libs_29_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
362620345 |
100% |
26210270538 |
100% |
| Mapped |
354764741 |
97.83 % |
25613244634 |
97.72 % |
| Passed |
177601905 |
48.98 % |
12148869098 |
46.35 % |
| NotPassed |
177162836 |
48.86 % |
13464375536 |
51.37 % |
| |
|
|
|
|
| LowMAPQ |
83119184 |
22.92 % |
6317057984 |
24.10 % |
| MateUnmapped |
7855604 |
2.17 % |
597025904 |
2.28 % |
| Duplicate |
89405995 |
24.66 % |
6794855620 |
25.92 % |
| BadOrientation |
4 |
0.00 % |
304 |
0.00 % |
| LargeInsertSize |
103704 |
0.03 % |
7881504 |
0.03 % |
| |
|
|
|
|
| NotCorrectlyAligned |
4533949 |
1.25 % |
344580124 |
1.31 % |
| Unmapped |
7855604 |
2.17 % |
597025904 |
2.28 % |
Base Level Counts
| Bases |
# |
% |
| Total |
13098794712 |
100% |
| Passed |
11048108043 |
84.34 % |
| Trimmed |
781098851 |
5.96 % |
| Clipped |
38127048 |
0.29 % |
| Overlapping |
911798566 |
6.96 % |
| LowQuality |
319662204 |
2.44 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |