/EXTERNAL BLUEPRINT/methylation/K012034_K012109_29libs_29_lane_gembs
BACK
SAMPLE K012034_K012109_29libs_29_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
23895498 |
2984155 |
12.49 % |
| NonRefCpG |
586866 |
8912 |
1.52 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
3832458 |
9.60 % |
177181 |
2.50 % |
237135 |
27.37 % |
2140 |
6.04 % |
| Intermediate (0.3-0.7) |
11481647 |
28.75 % |
1158534 |
16.37 % |
296026 |
34.17 % |
7313 |
20.64 % |
| Methylated (0.7-1) |
24628058 |
61.66 % |
5740873 |
81.12 % |
333157 |
38.46 % |
25979 |
73.32 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.780 |
|
0.880 |
|
0.570 |
|
0.850 |
|