/EXTERNAL BLUEPRINT/mapping_coverage/K012035_K012056_K012057_K012058_K012059_K012060_K012061_K012062_K012063_K012110_K012111_11_lane_gembs
BACK
SAMPLE K012035_K012056_K012057_K012058_K012059_K012060_K012061_K012062_K012063_K012110_K012111_11_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
220711266 |
100% |
15845648141 |
100% |
| Mapped |
214956531 |
97.39 % |
15408288281 |
97.24 % |
| Passed |
87581819 |
39.68 % |
5727810169 |
36.15 % |
| NotPassed |
127374712 |
57.71 % |
9680478112 |
61.09 % |
| |
|
|
|
|
| LowMAPQ |
53449652 |
24.22 % |
4062173552 |
25.64 % |
| MateUnmapped |
5754735 |
2.61 % |
437359860 |
2.76 % |
| Duplicate |
70661430 |
32.02 % |
5370268680 |
33.89 % |
| BadOrientation |
10 |
0.00 % |
760 |
0.00 % |
| LargeInsertSize |
36426 |
0.02 % |
2768376 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
3227194 |
1.46 % |
245266744 |
1.55 % |
| Unmapped |
5754735 |
2.61 % |
437359860 |
2.76 % |
Base Level Counts
| Bases |
# |
% |
| Total |
6204092192 |
100% |
| Passed |
5149709590 |
83.01 % |
| Trimmed |
367808675 |
5.93 % |
| Clipped |
21973667 |
0.35 % |
| Overlapping |
454308356 |
7.32 % |
| LowQuality |
210291904 |
3.39 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |