/EXTERNAL BLUEPRINT/K012036_K012064_K012065_K012066_K012067_K012068_K012069_K012070_K012071_K012112_K012113_11_lane_gembs/EXTERNAL-K012064_1895006_2
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SAMPLE K012036_K012064_K012065_K012066_K012067_K012068_K012069_K012070_K012071_K012112_K012113_11_lane_gembs LANE EXTERNAL-K012064_1895006_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 16591096 | 100.00 % | 8295548 | 100.00 % | 8295548 | 100.00 % |
| General Reads | 11884385 | 71.63 % | 6043932 | 72.86 % | 5840453 | 70.40 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 12 | 0.00 % | 6 | 0.00 % | 6 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4706699 | 28.37 % | 2251610 | 27.14 % | 2455089 | 29.60 % |
| Bisulfite_reads C2T | 6131149 | 36.95 % | 3116845 | 37.57 % | 3014304 | 36.34 % |
| Bisulfite_reads G2A | 5753248 | 34.68 % | 2927093 | 35.29 % | 2826155 | 34.07 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 4524993 |
| Average Unique | 54.55 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 401313593 | 31.41 % | 170579052 | 26.70 % | 230734541 | 36.12 % |
| Base Counts Overall C | 227374242 | 17.80 % | 79010857 | 12.37 % | 148363385 | 23.23 % |
| Base Counts Overall G | 234775723 | 18.38 % | 152364786 | 23.85 % | 82410937 | 12.90 % |
| Base Counts Overall T | 397352373 | 31.10 % | 228441342 | 35.76 % | 168911031 | 26.44 % |
| Base Counts Overall N | 16698461 | 1.31 % | 8361159 | 1.31 % | 8337302 | 1.31 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 5627080 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 8295548 |
| 76 | 8295548 |
Insert Size Plot
| Insert Size Histogram |
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