/EXTERNAL BLUEPRINT/K012036_K012064_K012065_K012066_K012067_K012068_K012069_K012070_K012071_K012112_K012113_11_lane_gembs/EXTERNAL-K012070_1895012_2
BACK
SAMPLE K012036_K012064_K012065_K012066_K012067_K012068_K012069_K012070_K012071_K012112_K012113_11_lane_gembs LANE EXTERNAL-K012070_1895012_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 19776692 | 100.00 % | 9888346 | 100.00 % | 9888346 | 100.00 % |
| General Reads | 11089988 | 56.08 % | 5621875 | 56.85 % | 5468113 | 55.30 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 29 | 0.00 % | 16 | 0.00 % | 13 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 8686675 | 43.92 % | 4266455 | 43.15 % | 4420220 | 44.70 % |
| Bisulfite_reads C2T | 5716574 | 28.91 % | 2897255 | 29.30 % | 2819319 | 28.51 % |
| Bisulfite_reads G2A | 5373443 | 27.17 % | 2724636 | 27.55 % | 2648807 | 26.79 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 4268478 |
| Average Unique | 43.17 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 462025012 | 30.34 % | 204906159 | 26.91 % | 257118853 | 33.77 % |
| Base Counts Overall C | 284196687 | 18.66 % | 110340657 | 14.49 % | 173856030 | 22.83 % |
| Base Counts Overall G | 292918500 | 19.24 % | 178172889 | 23.40 % | 114745611 | 15.07 % |
| Base Counts Overall T | 463754974 | 30.45 % | 258016154 | 33.89 % | 205738820 | 27.02 % |
| Base Counts Overall N | 19910111 | 1.31 % | 9966783 | 1.31 % | 9943328 | 1.31 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 5268679 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 9888346 |
| 76 | 9888346 |
Insert Size Plot
| Insert Size Histogram |
 |