/EXTERNAL BLUEPRINT/K012036_K012064_K012065_K012066_K012067_K012068_K012069_K012070_K012071_K012112_K012113_11_lane_gembs/EXTERNAL-K012112_1895054_2
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SAMPLE K012036_K012064_K012065_K012066_K012067_K012068_K012069_K012070_K012071_K012112_K012113_11_lane_gembs LANE EXTERNAL-K012112_1895054_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 39643838 | 100.00 % | 19821919 | 100.00 % | 19821919 | 100.00 % |
| General Reads | 31274920 | 78.89 % | 15876513 | 80.10 % | 15398407 | 77.68 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 4 | 0.00 % | 1 | 0.00 % | 3 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 8368914 | 21.11 % | 3945405 | 19.90 % | 4423509 | 22.32 % |
| Bisulfite_reads C2T | 16135659 | 40.70 % | 8187541 | 41.31 % | 7948118 | 40.10 % |
| Bisulfite_reads G2A | 15139265 | 38.19 % | 7688973 | 38.79 % | 7450292 | 37.59 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 12042032 |
| Average Unique | 60.75 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 984454270 | 32.25 % | 416822671 | 27.31 % | 567631599 | 37.19 % |
| Base Counts Overall C | 514372178 | 16.85 % | 158088661 | 10.36 % | 356283517 | 23.34 % |
| Base Counts Overall G | 533380630 | 17.47 % | 366565442 | 24.02 % | 166815188 | 10.93 % |
| Base Counts Overall T | 980464016 | 32.12 % | 564832594 | 37.01 % | 415631422 | 27.23 % |
| Base Counts Overall N | 39904432 | 1.31 % | 19978395 | 1.31 % | 19926037 | 1.31 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 14843665 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 19821919 |
| 76 | 19821919 |
Insert Size Plot
| Insert Size Histogram |
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