/EXTERNAL BLUEPRINT/K012036_K012064_K012065_K012066_K012067_K012068_K012069_K012070_K012071_K012112_K012113_11_lane_gembs

BACK

SAMPLE K012036_K012064_K012065_K012066_K012067_K012068_K012069_K012070_K012071_K012112_K012113_11_lane_gembs

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	328268932	100.00 %	164134466	100.00 %	164134466	100.00 %
General Reads	236191219	71.95 %	119964852	73.09 %	116226367	70.81 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	114	0.00 %	53	0.00 %	61	0.00 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	92077599	28.05 %	44169561	26.91 %	47908038	29.19 %
Bisulfite_reads C2T	121784287	37.10 %	61831866	37.67 %	59952421	36.53 %
Bisulfite_reads G2A	114407046	34.85 %	58133039	35.42 %	56274007	34.29 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	90441947
Average Unique	55.10 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	7891519042	31.22 %	3412329327	27.00 %	4479189715	35.44 %
Base Counts Overall C	4522961670	17.89 %	1604634623	12.70 %	2918327047	23.09 %
Base Counts Overall G	4659456237	18.43 %	2986248069	23.63 %	1673208168	13.24 %
Base Counts Overall T	7872316770	31.14 %	4469696958	35.37 %	3402619812	26.92 %
Base Counts Overall N	330454045	1.31 %	165444905	1.31 %	165009140	1.31 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	NA
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	111847229

Mapping Quality

Mapping Quality Histogram

Insert Size Plot

Insert Size Histogram

Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K012069_1895011_2
EXTERNAL-K012070_1895012_2
EXTERNAL-K012067_1895009_2
EXTERNAL-K012113_1895055_2
EXTERNAL-K012064_1895006_2
EXTERNAL-K012112_1895054_2
EXTERNAL-K012071_1895013_2
EXTERNAL-K012036_1894978_2
EXTERNAL-K012065_1895007_2
EXTERNAL-K012068_1895010_2
EXTERNAL-K012066_1895008_2