/EXTERNAL BLUEPRINT/mapping_coverage/K012036_K012064_K012065_K012066_K012067_K012068_K012069_K012070_K012071_K012112_K012113_11_lane_gembs
BACK
SAMPLE K012036_K012064_K012065_K012066_K012067_K012068_K012069_K012070_K012071_K012112_K012113_11_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
181957619 |
100% |
12998257446 |
100% |
| Mapped |
176728734 |
97.13 % |
12600862186 |
96.94 % |
| Passed |
76514775 |
42.05 % |
4984601302 |
38.35 % |
| NotPassed |
100213959 |
55.08 % |
7616260884 |
58.59 % |
| |
|
|
|
|
| LowMAPQ |
43283004 |
23.79 % |
3289508304 |
25.31 % |
| MateUnmapped |
5228885 |
2.87 % |
397395260 |
3.06 % |
| Duplicate |
54278147 |
29.83 % |
4125139172 |
31.74 % |
| BadOrientation |
4 |
0.00 % |
304 |
0.00 % |
| LargeInsertSize |
12112 |
0.01 % |
920512 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
2640692 |
1.45 % |
200692592 |
1.54 % |
| Unmapped |
5228885 |
2.87 % |
397395260 |
3.06 % |
Base Level Counts
| Bases |
# |
% |
| Total |
5445616372 |
100% |
| Passed |
4518810155 |
82.98 % |
| Trimmed |
320720996 |
5.89 % |
| Clipped |
17685138 |
0.32 % |
| Overlapping |
443329932 |
8.14 % |
| LowQuality |
145070151 |
2.66 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |