/EXTERNAL BLUEPRINT/methylation/K012036_K012064_K012065_K012066_K012067_K012068_K012069_K012070_K012071_K012112_K012113_11_lane_gembs
BACK
SAMPLE K012036_K012064_K012065_K012066_K012067_K012068_K012069_K012070_K012071_K012112_K012113_11_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
19847921 |
156239 |
0.79 % |
| NonRefCpG |
822950 |
379 |
0.05 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
3594138 |
12.93 % |
10232 |
2.42 % |
276665 |
26.65 % |
155 |
7.11 % |
| Intermediate (0.3-0.7) |
9560404 |
34.40 % |
74986 |
17.77 % |
381725 |
36.77 % |
498 |
22.83 % |
| Methylated (0.7-1) |
14640164 |
52.67 % |
336815 |
79.81 % |
379814 |
36.58 % |
1530 |
70.06 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.720 |
|
0.870 |
|
0.560 |
|
0.830 |
|