/EXTERNAL BLUEPRINT/K012038_K012079_K012116_K012117_4_lane_gembs

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SAMPLE K012038_K012079_K012116_K012117_4_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 245520238 100.00 % 122760119 100.00 % 122760119 100.00 %
General Reads 192718226 78.49 % 97207161 79.18 % 95511065 77.80 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 53 0.00 % 30 0.00 % 23 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 52801959 21.51 % 25552928 20.82 % 27249031 22.20 %
Bisulfite_reads C2T 99492975 40.52 % 50170755 40.87 % 49322220 40.18 %
Bisulfite_reads G2A 93225304 37.97 % 47036436 38.32 % 46188868 37.63 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 72563090
Average Unique 59.11 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 6225732189 32.93 % 2598186758 27.49 % 3627545431 38.38 %
Base Counts Overall C 3111961660 16.46 % 880897310 9.32 % 2231064350 23.60 %
Base Counts Overall G 3186583818 16.86 % 2266992828 23.98 % 919590990 9.73 %
Base Counts Overall T 6133058607 32.44 % 3582174003 37.90 % 2550884604 26.99 %
Base Counts Overall N 247722052 1.31 % 124278264 1.31 % 123443788 1.31 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 89778617



Mapping Quality

Mapping Quality Histogram
K012038_K012079_K012116_K012117_4_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K012038_K012079_K012116_K012117_4_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K012038_1894980_2
EXTERNAL-K012079_1895021_2
EXTERNAL-K012117_1895059_2
EXTERNAL-K012116_1895058_2