/EXTERNAL BLUEPRINT/mapping_coverage/K012038_K012079_K012116_K012117_4_lane_gembs
BACK
SAMPLE K012038_K012079_K012116_K012117_4_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
163250858 |
100% |
11431311966 |
100% |
| Mapped |
160430180 |
98.27 % |
11216940438 |
98.12 % |
| Passed |
89224116 |
54.65 % |
5805279574 |
50.78 % |
| NotPassed |
71206064 |
43.62 % |
5411660864 |
47.34 % |
| |
|
|
|
|
| LowMAPQ |
39100650 |
23.95 % |
2971649400 |
26.00 % |
| MateUnmapped |
2820678 |
1.73 % |
214371528 |
1.88 % |
| Duplicate |
29523404 |
18.08 % |
2243778704 |
19.63 % |
| BadOrientation |
8 |
0.00 % |
608 |
0.00 % |
| LargeInsertSize |
45752 |
0.03 % |
3477152 |
0.03 % |
| |
|
|
|
|
| NotCorrectlyAligned |
2536250 |
1.55 % |
192755000 |
1.69 % |
| Unmapped |
2820678 |
1.73 % |
214371528 |
1.88 % |
Base Level Counts
| Bases |
# |
% |
| Total |
6394920668 |
100% |
| Passed |
5259740299 |
82.25 % |
| Trimmed |
380109160 |
5.94 % |
| Clipped |
21115170 |
0.33 % |
| Overlapping |
568525924 |
8.89 % |
| LowQuality |
165430115 |
2.59 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |