/EXTERNAL BLUEPRINT/methylation/K012038_K012079_K012116_K012117_4_lane_gembs
BACK
SAMPLE K012038_K012079_K012116_K012117_4_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
20937748 |
259534 |
1.24 % |
| NonRefCpG |
854350 |
683 |
0.08 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
4131816 |
13.75 % |
23838 |
3.52 % |
347350 |
30.88 % |
392 |
9.97 % |
| Intermediate (0.3-0.7) |
10012348 |
33.31 % |
123468 |
18.24 % |
408481 |
36.32 % |
920 |
23.40 % |
| Methylated (0.7-1) |
15911979 |
52.94 % |
529462 |
78.23 % |
368947 |
32.80 % |
2622 |
66.63 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.720 |
|
0.870 |
|
0.510 |
|
0.820 |
|