/EXTERNAL BLUEPRINT/K012033_K012040_K012041_K012042_K012043_K012044_K012045_K012046_K012047_K012106_K012107_11_lane_gembs/EXTERNAL-K012040_1894982_2
BACK
SAMPLE K012033_K012040_K012041_K012042_K012043_K012044_K012045_K012046_K012047_K012106_K012107_11_lane_gembs LANE EXTERNAL-K012040_1894982_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 15540362 | 100.00 % | 7770181 | 100.00 % | 7770181 | 100.00 % |
| General Reads | 7895220 | 50.80 % | 3975818 | 51.17 % | 3919402 | 50.44 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 6 | 0.00 % | 3 | 0.00 % | 3 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 7645136 | 49.20 % | 3794360 | 48.83 % | 3850776 | 49.56 % |
| Bisulfite_reads C2T | 4102038 | 26.40 % | 2065225 | 26.58 % | 2036813 | 26.21 % |
| Bisulfite_reads G2A | 3793188 | 24.41 % | 1910596 | 24.59 % | 1882592 | 24.23 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 2988031 |
| Average Unique | 38.46 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 356947897 | 29.83 % | 161531924 | 27.00 % | 195415973 | 32.66 % |
| Base Counts Overall C | 232316441 | 19.41 % | 92169196 | 15.41 % | 140147245 | 23.42 % |
| Base Counts Overall G | 236719512 | 19.78 % | 141836640 | 23.71 % | 94882872 | 15.86 % |
| Base Counts Overall T | 354834235 | 29.65 % | 194930644 | 32.58 % | 159903591 | 26.73 % |
| Base Counts Overall N | 15789789 | 1.32 % | 7835533 | 1.31 % | 7954256 | 1.33 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 3726525 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 7770181 |
| 76 | 7770181 |
Insert Size Plot
| Insert Size Histogram |
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