/EXTERNAL BLUEPRINT/K012033_K012040_K012041_K012042_K012043_K012044_K012045_K012046_K012047_K012106_K012107_11_lane_gembs/EXTERNAL-K012041_1894983_2
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SAMPLE K012033_K012040_K012041_K012042_K012043_K012044_K012045_K012046_K012047_K012106_K012107_11_lane_gembs LANE EXTERNAL-K012041_1894983_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 26290090 | 100.00 % | 13145045 | 100.00 % | 13145045 | 100.00 % |
| General Reads | 19174625 | 72.93 % | 9673644 | 73.59 % | 9500981 | 72.28 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 29 | 0.00 % | 13 | 0.00 % | 16 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 7115436 | 27.07 % | 3471388 | 26.41 % | 3644048 | 27.72 % |
| Bisulfite_reads C2T | 10105824 | 38.44 % | 5096165 | 38.77 % | 5009659 | 38.11 % |
| Bisulfite_reads G2A | 9068830 | 34.50 % | 4577492 | 34.82 % | 4491338 | 34.17 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 7285819 |
| Average Unique | 55.43 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 616759749 | 30.47 % | 275353980 | 27.20 % | 341405769 | 33.73 % |
| Base Counts Overall C | 379028047 | 18.72 % | 143816223 | 14.21 % | 235211824 | 23.24 % |
| Base Counts Overall G | 386310837 | 19.08 % | 238744725 | 23.59 % | 147566112 | 14.58 % |
| Base Counts Overall T | 615544663 | 30.41 % | 341002669 | 33.69 % | 274541994 | 27.12 % |
| Base Counts Overall N | 26693634 | 1.32 % | 13250868 | 1.31 % | 13442766 | 1.33 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 9165951 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 13145045 |
| 76 | 13145045 |
Insert Size Plot
| Insert Size Histogram |
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