/EXTERNAL BLUEPRINT/K012033_K012040_K012041_K012042_K012043_K012044_K012045_K012046_K012047_K012106_K012107_11_lane_gembs/EXTERNAL-K012042_1894984_2
BACK
SAMPLE K012033_K012040_K012041_K012042_K012043_K012044_K012045_K012046_K012047_K012106_K012107_11_lane_gembs LANE EXTERNAL-K012042_1894984_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 13262570 | 100.00 % | 6631285 | 100.00 % | 6631285 | 100.00 % |
| General Reads | 8736636 | 65.87 % | 4403092 | 66.40 % | 4333544 | 65.35 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 8 | 0.00 % | 4 | 0.00 % | 4 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4525926 | 34.13 % | 2228189 | 33.60 % | 2297737 | 34.65 % |
| Bisulfite_reads C2T | 4516423 | 34.05 % | 2275644 | 34.32 % | 2240779 | 33.79 % |
| Bisulfite_reads G2A | 4220221 | 31.82 % | 2127452 | 32.08 % | 2092769 | 31.56 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 3353602 |
| Average Unique | 50.57 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 312632168 | 30.61 % | 135407944 | 26.52 % | 177224224 | 34.71 % |
| Base Counts Overall C | 189650548 | 18.57 % | 66709754 | 13.06 % | 122940794 | 24.08 % |
| Base Counts Overall G | 194506508 | 19.05 % | 125107612 | 24.50 % | 69398896 | 13.59 % |
| Base Counts Overall T | 310968209 | 30.45 % | 176699027 | 34.61 % | 134269182 | 26.30 % |
| Base Counts Overall N | 13460457 | 1.32 % | 6684608 | 1.31 % | 6775849 | 1.33 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 4147145 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 6631285 |
| 76 | 6631285 |
Insert Size Plot
| Insert Size Histogram |
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