/EXTERNAL BLUEPRINT/K012033_K012040_K012041_K012042_K012043_K012044_K012045_K012046_K012047_K012106_K012107_11_lane_gembs/EXTERNAL-K012043_1894985_2
BACK
SAMPLE K012033_K012040_K012041_K012042_K012043_K012044_K012045_K012046_K012047_K012106_K012107_11_lane_gembs LANE EXTERNAL-K012043_1894985_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 11639718 | 100.00 % | 5819859 | 100.00 % | 5819859 | 100.00 % |
| General Reads | 8029608 | 68.98 % | 4043314 | 69.47 % | 3986294 | 68.49 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 12 | 0.00 % | 6 | 0.00 % | 6 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 3610098 | 31.02 % | 1776539 | 30.53 % | 1833559 | 31.51 % |
| Bisulfite_reads C2T | 4150691 | 35.66 % | 2089676 | 35.91 % | 2061015 | 35.41 % |
| Bisulfite_reads G2A | 3878929 | 33.32 % | 1953644 | 33.57 % | 1925285 | 33.08 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 3094127 |
| Average Unique | 53.16 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 280551278 | 31.30 % | 119001209 | 26.56 % | 161550069 | 36.05 % |
| Base Counts Overall C | 160637077 | 17.92 % | 52634861 | 11.75 % | 108002216 | 24.10 % |
| Base Counts Overall G | 163717000 | 18.27 % | 109315350 | 24.39 % | 54401650 | 12.14 % |
| Base Counts Overall T | 279503266 | 31.19 % | 161303932 | 35.99 % | 118199334 | 26.38 % |
| Base Counts Overall N | 11849665 | 1.32 % | 5873791 | 1.31 % | 5975874 | 1.33 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 3818563 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 5819859 |
| 76 | 5819859 |
Insert Size Plot
| Insert Size Histogram |
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