/EXTERNAL BLUEPRINT/K012033_K012040_K012041_K012042_K012043_K012044_K012045_K012046_K012047_K012106_K012107_11_lane_gembs/EXTERNAL-K012044_1894986_2
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SAMPLE K012033_K012040_K012041_K012042_K012043_K012044_K012045_K012046_K012047_K012106_K012107_11_lane_gembs LANE EXTERNAL-K012044_1894986_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 22301872 | 100.00 % | 11150936 | 100.00 % | 11150936 | 100.00 % |
| General Reads | 17392806 | 77.99 % | 8791942 | 78.84 % | 8600864 | 77.13 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 5 | 0.00 % | 2 | 0.00 % | 3 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4909061 | 22.01 % | 2358992 | 21.16 % | 2550069 | 22.87 % |
| Bisulfite_reads C2T | 9012079 | 40.41 % | 4553507 | 40.84 % | 4458572 | 39.98 % |
| Bisulfite_reads G2A | 8380732 | 37.58 % | 4238437 | 38.01 % | 4142295 | 37.15 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 6772976 |
| Average Unique | 60.74 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 496223849 | 28.90 % | 240836027 | 28.05 % | 255387822 | 29.74 % |
| Base Counts Overall C | 347772032 | 20.25 % | 161197728 | 18.77 % | 186574304 | 21.73 % |
| Base Counts Overall G | 350307240 | 20.40 % | 187783423 | 21.87 % | 162523817 | 18.93 % |
| Base Counts Overall T | 500296360 | 29.13 % | 257563559 | 30.00 % | 242732801 | 28.27 % |
| Base Counts Overall N | 22644663 | 1.32 % | 11241335 | 1.31 % | 11403328 | 1.33 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 8389936 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 11150936 |
| 76 | 11150936 |
Insert Size Plot
| Insert Size Histogram |
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