/EXTERNAL BLUEPRINT/K012033_K012040_K012041_K012042_K012043_K012044_K012045_K012046_K012047_K012106_K012107_11_lane_gembs/EXTERNAL-K012045_1894987_2
BACK
SAMPLE K012033_K012040_K012041_K012042_K012043_K012044_K012045_K012046_K012047_K012106_K012107_11_lane_gembs LANE EXTERNAL-K012045_1894987_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 16756012 | 100.00 % | 8378006 | 100.00 % | 8378006 | 100.00 % |
| General Reads | 10395212 | 62.04 % | 5235189 | 62.49 % | 5160023 | 61.59 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 6360800 | 37.96 % | 3142817 | 37.51 % | 3217983 | 38.41 % |
| Bisulfite_reads C2T | 5411589 | 32.30 % | 2724439 | 32.52 % | 2687150 | 32.07 % |
| Bisulfite_reads G2A | 4983623 | 29.74 % | 2510750 | 29.97 % | 2472873 | 29.52 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 3936816 |
| Average Unique | 46.99 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 408882551 | 31.69 % | 165715542 | 25.69 % | 243167009 | 37.69 % |
| Base Counts Overall C | 226412384 | 17.55 % | 64469857 | 9.99 % | 161942527 | 25.10 % |
| Base Counts Overall G | 232002944 | 17.98 % | 164677747 | 25.53 % | 67325197 | 10.44 % |
| Base Counts Overall T | 405887491 | 31.46 % | 241795332 | 37.48 % | 164092159 | 25.44 % |
| Base Counts Overall N | 17027554 | 1.32 % | 8447984 | 1.31 % | 8579570 | 1.33 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 4902585 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 8378006 |
| 76 | 8378006 |
Insert Size Plot
| Insert Size Histogram |
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