/EXTERNAL BLUEPRINT/K012033_K012040_K012041_K012042_K012043_K012044_K012045_K012046_K012047_K012106_K012107_11_lane_gembs/EXTERNAL-K012046_1894988_2
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SAMPLE K012033_K012040_K012041_K012042_K012043_K012044_K012045_K012046_K012047_K012106_K012107_11_lane_gembs LANE EXTERNAL-K012046_1894988_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 42968454 | 100.00 % | 21484227 | 100.00 % | 21484227 | 100.00 % |
| General Reads | 11214531 | 26.10 % | 5654797 | 26.32 % | 5559734 | 25.88 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 6 | 0.00 % | 2 | 0.00 % | 4 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 31753917 | 73.90 % | 15829428 | 73.68 % | 15924489 | 74.12 % |
| Bisulfite_reads C2T | 5826341 | 13.56 % | 2936481 | 13.67 % | 2889860 | 13.45 % |
| Bisulfite_reads G2A | 5388196 | 12.54 % | 2718318 | 12.65 % | 2669878 | 12.43 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 4144208 |
| Average Unique | 19.29 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 960273137 | 29.02 % | 456352730 | 27.59 % | 503920407 | 30.46 % |
| Base Counts Overall C | 666100702 | 20.13 % | 307537531 | 18.59 % | 358563171 | 21.67 % |
| Base Counts Overall G | 681862648 | 20.61 % | 365510643 | 22.09 % | 316352005 | 19.12 % |
| Base Counts Overall T | 956668293 | 28.91 % | 503215741 | 30.42 % | 453452552 | 27.41 % |
| Base Counts Overall N | 43666178 | 1.32 % | 21668834 | 1.31 % | 21997344 | 1.33 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 5170946 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 21484227 |
| 76 | 21484227 |
Insert Size Plot
| Insert Size Histogram |
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