/EXTERNAL BLUEPRINT/K012033_K012040_K012041_K012042_K012043_K012044_K012045_K012046_K012047_K012106_K012107_11_lane_gembs/EXTERNAL-K012047_1894989_2
BACK
SAMPLE K012033_K012040_K012041_K012042_K012043_K012044_K012045_K012046_K012047_K012106_K012107_11_lane_gembs LANE EXTERNAL-K012047_1894989_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 19816112 | 100.00 % | 9908056 | 100.00 % | 9908056 | 100.00 % |
| General Reads | 13133682 | 66.28 % | 6621036 | 66.82 % | 6512646 | 65.73 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 2 | 0.00 % | 1 | 0.00 % | 1 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 6682428 | 33.72 % | 3287019 | 33.18 % | 3395409 | 34.27 % |
| Bisulfite_reads C2T | 6784372 | 34.24 % | 3419126 | 34.51 % | 3365246 | 33.96 % |
| Bisulfite_reads G2A | 6349312 | 32.04 % | 3201911 | 32.32 % | 3147401 | 31.77 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 5032918 |
| Average Unique | 50.80 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 481153999 | 31.53 % | 201009301 | 26.35 % | 280144698 | 36.72 % |
| Base Counts Overall C | 269704498 | 17.68 % | 84113105 | 11.03 % | 185591393 | 24.33 % |
| Base Counts Overall G | 276542040 | 18.12 % | 188733997 | 24.74 % | 87808043 | 11.51 % |
| Base Counts Overall T | 478320620 | 31.35 % | 279075619 | 36.58 % | 199245001 | 26.12 % |
| Base Counts Overall N | 20119467 | 1.32 % | 9988290 | 1.31 % | 10131177 | 1.33 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 6212709 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 9908056 |
| 76 | 9908056 |
Insert Size Plot
| Insert Size Histogram |
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