/EXTERNAL BLUEPRINT/K012033_K012040_K012041_K012042_K012043_K012044_K012045_K012046_K012047_K012106_K012107_11_lane_gembs/EXTERNAL-K012107_1895049_2
BACK
SAMPLE K012033_K012040_K012041_K012042_K012043_K012044_K012045_K012046_K012047_K012106_K012107_11_lane_gembs LANE EXTERNAL-K012107_1895049_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 56749284 | 100.00 % | 28374642 | 100.00 % | 28374642 | 100.00 % |
| General Reads | 47893188 | 84.39 % | 24103192 | 84.95 % | 23789996 | 83.84 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 4 | 0.00 % | 2 | 0.00 % | 2 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 8856092 | 15.61 % | 4271448 | 15.05 % | 4584644 | 16.16 % |
| Bisulfite_reads C2T | 24755301 | 43.62 % | 12455747 | 43.90 % | 12299554 | 43.35 % |
| Bisulfite_reads G2A | 23137891 | 40.77 % | 11647447 | 41.05 % | 11490444 | 40.50 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 18512721 |
| Average Unique | 65.24 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 1506523753 | 34.48 % | 593230825 | 27.15 % | 913292928 | 41.80 % |
| Base Counts Overall C | 652290286 | 14.93 % | 124951870 | 5.72 % | 527338416 | 24.14 % |
| Base Counts Overall G | 669263802 | 15.32 % | 537148822 | 24.59 % | 132114980 | 6.05 % |
| Base Counts Overall T | 1484007879 | 33.96 % | 900913328 | 41.23 % | 583094551 | 26.69 % |
| Base Counts Overall N | 57609148 | 1.32 % | 28602589 | 1.31 % | 29006559 | 1.33 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 22796228 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 28374642 |
| 76 | 28374642 |
Insert Size Plot
| Insert Size Histogram |
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