/EXTERNAL BLUEPRINT/K012033_K012040_K012041_K012042_K012043_K012044_K012045_K012046_K012047_K012106_K012107_11_lane_gembs

BACK

SAMPLE K012033_K012040_K012041_K012042_K012043_K012044_K012045_K012046_K012047_K012106_K012107_11_lane_gembs

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	362416314	100.00 %	181208157	100.00 %	181208157	100.00 %
General Reads	267998946	73.95 %	135030918	74.52 %	132968028	73.38 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	103	0.00 %	55	0.00 %	48	0.00 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	94417265	26.05 %	46177184	25.48 %	48240081	26.62 %
Bisulfite_reads C2T	139262859	38.43 %	70145880	38.71 %	69116979	38.14 %
Bisulfite_reads G2A	128736190	35.52 %	64885093	35.81 %	63851097	35.24 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	102153581
Average Unique	56.37 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	9133615409	32.73 %	3810698589	27.31 %	5322916820	38.15 %
Base Counts Overall C	4638529277	16.62 %	1361432889	9.76 %	3277096388	23.49 %
Base Counts Overall G	4738769893	16.98 %	3328122805	23.85 %	1410647088	10.11 %
Base Counts Overall T	9027083354	32.35 %	5270084891	37.77 %	3756998463	26.93 %
Base Counts Overall N	368058245	1.32 %	182688915	1.31 %	185369330	1.33 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	NA
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	126746659

Mapping Quality

Mapping Quality Histogram

Insert Size Plot

Insert Size Histogram

Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K012033_1894975_2
EXTERNAL-K012106_1895048_2
EXTERNAL-K012042_1894984_2
EXTERNAL-K012107_1895049_2
EXTERNAL-K012040_1894982_2
EXTERNAL-K012045_1894987_2
EXTERNAL-K012047_1894989_2
EXTERNAL-K012043_1894985_2
EXTERNAL-K012046_1894988_2
EXTERNAL-K012044_1894986_2
EXTERNAL-K012041_1894983_2