/EXTERNAL BLUEPRINT/mapping_coverage/K012033_K012040_K012041_K012042_K012043_K012044_K012045_K012046_K012047_K012106_K012107_11_lane_gembs
BACK
SAMPLE K012033_K012040_K012041_K012042_K012043_K012044_K012045_K012046_K012047_K012106_K012107_11_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
213274375 |
100% |
15207791766 |
100% |
| Mapped |
209409979 |
98.19 % |
14914097670 |
98.07 % |
| Passed |
99042197 |
46.44 % |
6526146238 |
42.91 % |
| NotPassed |
110367782 |
51.75 % |
8387951432 |
55.16 % |
| |
|
|
|
|
| LowMAPQ |
52907322 |
24.81 % |
4020956472 |
26.44 % |
| MateUnmapped |
3864396 |
1.81 % |
293694096 |
1.93 % |
| Duplicate |
54786794 |
25.69 % |
4163796344 |
27.38 % |
| BadOrientation |
2 |
0.00 % |
152 |
0.00 % |
| LargeInsertSize |
23872 |
0.01 % |
1814272 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
2649792 |
1.24 % |
201384192 |
1.32 % |
| Unmapped |
3864396 |
1.81 % |
293694096 |
1.93 % |
Base Level Counts
| Bases |
# |
% |
| Total |
7108895828 |
100% |
| Passed |
5943298131 |
83.60 % |
| Trimmed |
426104546 |
5.99 % |
| Clipped |
22495725 |
0.32 % |
| Overlapping |
560253865 |
7.88 % |
| LowQuality |
156743561 |
2.20 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |