/EXTERNAL BLUEPRINT/methylation/K012033_K012040_K012041_K012042_K012043_K012044_K012045_K012046_K012047_K012106_K012107_11_lane_gembs
BACK
SAMPLE K012033_K012040_K012041_K012042_K012043_K012044_K012045_K012046_K012047_K012106_K012107_11_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
21762992 |
389430 |
1.79 % |
| NonRefCpG |
817128 |
1103 |
0.13 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
4446910 |
13.86 % |
37110 |
3.63 % |
330427 |
30.20 % |
603 |
9.93 % |
| Intermediate (0.3-0.7) |
10648617 |
33.18 % |
188767 |
18.44 % |
394834 |
36.09 % |
1418 |
23.34 % |
| Methylated (0.7-1) |
16993397 |
52.96 % |
797641 |
77.93 % |
368890 |
33.71 % |
4055 |
66.73 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.720 |
|
0.860 |
|
0.520 |
|
0.820 |
|