/EXTERNAL BLUEPRINT/K012136_1_lane_gembs

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SAMPLE K012136_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 93303666 100.00 % 46651833 100.00 % 46651833 100.00 %
General Reads 87981118 94.30 % 44250514 94.85 % 43730604 93.74 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 3 0.00 % 1 0.00 % 2 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 5322545 5.70 % 2401318 5.15 % 2921227 6.26 %
Bisulfite_reads C2T 45536419 48.80 % 22896833 49.08 % 22639586 48.53 %
Bisulfite_reads G2A 42444702 45.49 % 21353682 45.77 % 21091020 45.21 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 33185323
Average Unique 71.13 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 2548566779 35.47 % 974567263 27.13 % 1573999516 43.82 %
Base Counts Overall C 1014545646 14.12 % 120266723 3.35 % 894278923 24.90 %
Base Counts Overall G 1048732125 14.60 % 901660667 25.10 % 147071458 4.09 %
Base Counts Overall T 2478538837 34.50 % 1548814337 43.12 % 929724500 25.88 %
Base Counts Overall N 93998895 1.31 % 46882151 1.31 % 47116744 1.31 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 40945937



Mapping Quality

Mapping Quality Histogram
K012136_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K012136_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K012136_1895078_2