/EXTERNAL BLUEPRINT/mapping_coverage/K012136_1_lane_gembs
BACK
SAMPLE K012136_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
78715148 |
100% |
5417402383 |
100% |
| Mapped |
77743459 |
98.77 % |
5343554019 |
98.64 % |
| Passed |
49352257 |
62.70 % |
3185822667 |
58.81 % |
| NotPassed |
28391202 |
36.07 % |
2157731352 |
39.83 % |
| |
|
|
|
|
| LowMAPQ |
18207142 |
23.13 % |
1383742792 |
25.54 % |
| MateUnmapped |
971689 |
1.23 % |
73848364 |
1.36 % |
| Duplicate |
9285085 |
11.80 % |
705666460 |
13.03 % |
| BadOrientation |
2 |
0.00 % |
152 |
0.00 % |
| LargeInsertSize |
2262 |
0.00 % |
171912 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
896711 |
1.14 % |
68150036 |
1.26 % |
| Unmapped |
971689 |
1.23 % |
73848364 |
1.36 % |
Base Level Counts
| Bases |
# |
% |
| Total |
3565801060 |
100% |
| Passed |
2880854824 |
80.79 % |
| Trimmed |
207385983 |
5.82 % |
| Clipped |
8925249 |
0.25 % |
| Overlapping |
371053144 |
10.41 % |
| LowQuality |
97581860 |
2.74 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |