/EXTERNAL BLUEPRINT/methylation/K012136_1_lane_gembs

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SAMPLE K012136_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 17334268 50260 0.29 %
NonRefCpG 858733 139 0.02 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K012136_1_lane_gembs_coverage_refCpG.png ./IMG//K012136_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K012136_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K012136_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K012136_1_lane_gembs_quality_refcpg.png ./IMG//K012136_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K012136_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 3880836 17.22 % 5389 3.98 % 269556 26.77 % 58 7.76 %
Intermediate (0.3-0.7) 7903220 35.08 % 24994 18.44 % 376370 37.38 % 163 21.76 %
Methylated (0.7-1) 10747525 47.70 % 105132 77.58 % 360846 35.84 % 530 70.48 %
Median Methylation 0.680 0.860 0.560 0.840