/EXTERNAL BLUEPRINT/K012135_1_lane_gembs

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SAMPLE K012135_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 105817444 100.00 % 52908722 100.00 % 52908722 100.00 %
General Reads 101597205 96.01 % 51029995 96.45 % 50567210 95.57 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 4220239 3.99 % 1878727 3.55 % 2341512 4.43 %
Bisulfite_reads C2T 52657227 49.76 % 26443915 49.98 % 26213312 49.54 %
Bisulfite_reads G2A 48939978 46.25 % 24586080 46.47 % 24353898 46.03 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 38118651
Average Unique 72.05 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 2927436707 35.93 % 1122891343 27.56 % 1804545364 44.29 %
Base Counts Overall C 1121584628 13.77 % 139196419 3.42 % 982388209 24.11 %
Base Counts Overall G 1153699235 14.16 % 991902719 24.35 % 161796516 3.97 %
Base Counts Overall T 2839152528 34.85 % 1767003735 43.37 % 1072148793 26.32 %
Base Counts Overall N 106070090 1.30 % 52977378 1.30 % 53092712 1.30 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 47117875



Mapping Quality

Mapping Quality Histogram
K012135_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K012135_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K012135_1895077_2