/EXTERNAL BLUEPRINT/mapping_coverage/K012135_1_lane_gembs
BACK
SAMPLE K012135_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
89071127 |
100% |
6155558042 |
100% |
| Mapped |
87933702 |
98.72 % |
6069113742 |
98.60 % |
| Passed |
53135904 |
59.66 % |
3424481094 |
55.63 % |
| NotPassed |
34797798 |
39.07 % |
2644632648 |
42.96 % |
| |
|
|
|
|
| LowMAPQ |
21068592 |
23.65 % |
1601212992 |
26.01 % |
| MateUnmapped |
1137425 |
1.28 % |
86444300 |
1.40 % |
| Duplicate |
12552964 |
14.09 % |
954025264 |
15.50 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
3554 |
0.00 % |
270104 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
1172688 |
1.32 % |
89124288 |
1.45 % |
| Unmapped |
1137425 |
1.28 % |
86444300 |
1.40 % |
Base Level Counts
| Bases |
# |
% |
| Total |
3827953788 |
100% |
| Passed |
2999540231 |
78.36 % |
| Trimmed |
221609999 |
5.79 % |
| Clipped |
10449795 |
0.27 % |
| Overlapping |
393022899 |
10.27 % |
| LowQuality |
203330864 |
5.31 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |