/EXTERNAL BLUEPRINT/methylation/K012135_1_lane_gembs

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SAMPLE K012135_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 17572364 30605 0.17 %
NonRefCpG 1042193 61 0.01 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K012135_1_lane_gembs_coverage_refCpG.png ./IMG//K012135_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K012135_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K012135_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K012135_1_lane_gembs_quality_refcpg.png ./IMG//K012135_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K012135_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 3791622 16.60 % 2659 3.06 % 311289 25.57 % 45 9.50 %
Intermediate (0.3-0.7) 8084032 35.38 % 15854 18.25 % 456656 37.51 % 107 22.42 %
Methylated (0.7-1) 10971111 48.02 % 68370 78.69 % 449510 36.92 % 325 68.08 %
Median Methylation 0.680 0.870 0.570 0.820