/EXTERNAL BLUEPRINT/K012134_1_lane_gembs

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SAMPLE K012134_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 85911034 100.00 % 42955517 100.00 % 42955517 100.00 %
General Reads 76278368 88.79 % 38310757 89.19 % 37967611 88.39 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 9632666 11.21 % 4644760 10.81 % 4987906 11.61 %
Bisulfite_reads C2T 39460395 45.93 % 19814114 46.13 % 19646281 45.74 %
Bisulfite_reads G2A 36817973 42.86 % 18496643 43.06 % 18321330 42.65 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 28177440
Average Unique 65.60 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 2291161168 34.64 % 884664891 26.75 % 1406496277 42.52 %
Base Counts Overall C 977629293 14.78 % 168440598 5.09 % 809188695 24.46 %
Base Counts Overall G 1003570707 15.17 % 812421207 24.56 % 191149500 5.78 %
Base Counts Overall T 2255472209 34.10 % 1398223003 42.27 % 857249206 25.92 %
Base Counts Overall N 87316241 1.32 % 43825110 1.32 % 43491131 1.31 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 34950313



Mapping Quality

Mapping Quality Histogram
K012134_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K012134_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K012134_1895076_2