/EXTERNAL BLUEPRINT/mapping_coverage/K012134_1_lane_gembs
BACK
SAMPLE K012134_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
63179761 |
100% |
4414385069 |
100% |
| Mapped |
62249531 |
98.53 % |
4343687589 |
98.40 % |
| Passed |
31494101 |
49.85 % |
2006274909 |
45.45 % |
| NotPassed |
30755430 |
48.68 % |
2337412680 |
52.95 % |
| |
|
|
|
|
| LowMAPQ |
16770578 |
26.54 % |
1274563928 |
28.87 % |
| MateUnmapped |
930230 |
1.47 % |
70697480 |
1.60 % |
| Duplicate |
13141670 |
20.80 % |
998766920 |
22.63 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
3114 |
0.00 % |
236664 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
840068 |
1.33 % |
63845168 |
1.45 % |
| Unmapped |
930230 |
1.47 % |
70697480 |
1.60 % |
Base Level Counts
| Bases |
# |
% |
| Total |
2254390432 |
100% |
| Passed |
1824534990 |
80.93 % |
| Trimmed |
131262130 |
5.82 % |
| Clipped |
6893574 |
0.31 % |
| Overlapping |
241221949 |
10.70 % |
| LowQuality |
50477789 |
2.24 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |