/EXTERNAL BLUEPRINT/K012132_1_lane_gembs

BACK

SAMPLE K012132_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 65012344 100.00 % 32506172 100.00 % 32506172 100.00 %
General Reads 60396836 92.90 % 30326714 93.30 % 30070122 92.51 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1 0.00 % 0 0.00 % 1 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 4615507 7.10 % 2179458 6.70 % 2436049 7.49 %
Bisulfite_reads C2T 31292610 48.13 % 15710783 48.33 % 15581827 47.93 %
Bisulfite_reads G2A 29104227 44.77 % 14615931 44.96 % 14488296 44.57 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 22006963
Average Unique 67.70 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 1763210300 35.22 % 676123869 27.01 % 1087086431 43.43 %
Base Counts Overall C 737262957 14.73 % 132498916 5.29 % 604764041 24.16 %
Base Counts Overall G 730701013 14.60 % 602293319 24.06 % 128407694 5.13 %
Base Counts Overall T 1709623198 34.15 % 1059514936 42.33 % 650108262 25.97 %
Base Counts Overall N 65153020 1.30 % 32544204 1.30 % 32608816 1.30 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 27489093



Mapping Quality

Mapping Quality Histogram
K012132_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K012132_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K012132_1895074_2