/EXTERNAL BLUEPRINT/mapping_coverage/K012132_1_lane_gembs
BACK
SAMPLE K012132_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
52958155 |
100% |
3652485096 |
100% |
| Mapped |
52088243 |
98.36 % |
3586371784 |
98.19 % |
| Passed |
30376656 |
57.36 % |
1936291172 |
53.01 % |
| NotPassed |
21711587 |
41.00 % |
1650080612 |
45.18 % |
| |
|
|
|
|
| LowMAPQ |
13381604 |
25.27 % |
1017001904 |
27.84 % |
| MateUnmapped |
869912 |
1.64 % |
66113312 |
1.81 % |
| Duplicate |
7462893 |
14.09 % |
567179868 |
15.53 % |
| BadOrientation |
2 |
0.00 % |
152 |
0.00 % |
| LargeInsertSize |
2488 |
0.00 % |
189088 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
864600 |
1.63 % |
65709600 |
1.80 % |
| Unmapped |
869912 |
1.64 % |
66113312 |
1.81 % |
Base Level Counts
| Bases |
# |
% |
| Total |
2176703156 |
100% |
| Passed |
1676692558 |
77.03 % |
| Trimmed |
125343635 |
5.76 % |
| Clipped |
6483003 |
0.30 % |
| Overlapping |
233928981 |
10.75 % |
| LowQuality |
134254979 |
6.17 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |