/EXTERNAL BLUEPRINT/methylation/K012132_1_lane_gembs

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SAMPLE K012132_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 13064479 2333 0.02 %
NonRefCpG 939637 10 0.00 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K012132_1_lane_gembs_coverage_refCpG.png ./IMG//K012132_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K012132_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K012132_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K012132_1_lane_gembs_quality_refcpg.png ./IMG//K012132_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K012132_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 2521813 16.26 % 199 3.00 % 231083 22.43 % 3 8.26 %
Intermediate (0.3-0.7) 5667670 36.55 % 1315 19.78 % 391371 37.99 % 9 22.41 %
Methylated (0.7-1) 7317378 47.19 % 5133 77.21 % 407714 39.58 % 28 69.33 %
Median Methylation 0.670 0.860 0.600 0.840