{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 97628992, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 96374483, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.72, 
            "paired": 97628992, 
            "paired_qc_failed": 0, 
            "read1": 48814496, 
            "read1_qc_failed": 0, 
            "read2": 48814496, 
            "read2_qc_failed": 0, 
            "paired_properly": 95737395, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 98.06, 
            "with_itself": 96064743, 
            "with_itself_qc_failed": 0, 
            "singletons": 309740, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.32, 
            "diff_chroms": 172315, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 193594802, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 187969057, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 97.09, 
            "paired": 193594802, 
            "paired_qc_failed": 0, 
            "read1": 96797401, 
            "read1_qc_failed": 0, 
            "read2": 96797401, 
            "read2_qc_failed": 0, 
            "paired_properly": 184287983, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 95.19, 
            "with_itself": 185784698, 
            "with_itself_qc_failed": 0, 
            "singletons": 2184359, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 1.13, 
            "diff_chroms": 610670, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 43808321, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 1240503, 
            "paired_opt_dupes": 9344, 
            "dupes_pct": 0.028317
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 78211821, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 539110, 
            "paired_opt_dupes": 19807, 
            "dupes_pct": 0.006893
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 43796518, 
            "distinct_read_pairs": 42556369, 
            "one_read_pair": 41346290, 
            "two_read_pair": 1180729, 
            "NRF": 0.971684, 
            "PBC1": 0.971565, 
            "PBC2": 35.017595
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 77646644, 
            "distinct_read_pairs": 77172156, 
            "one_read_pair": 76701136, 
            "two_read_pair": 467668, 
            "NRF": 0.993889, 
            "PBC1": 0.993897, 
            "PBC2": 164.007664
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 85135636, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 85135636, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 85135636, 
            "paired_qc_failed": 0, 
            "read1": 42567818, 
            "read1_qc_failed": 0, 
            "read2": 42567818, 
            "read2_qc_failed": 0, 
            "paired_properly": 85135636, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 85135636, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 155345422, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 155345422, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 155345422, 
            "paired_qc_failed": 0, 
            "read1": 77672711, 
            "read1_qc_failed": 0, 
            "read2": 77672711, 
            "read2_qc_failed": 0, 
            "paired_properly": 155345422, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 155345422, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 155150, 
        "Np": 0, 
        "N_opt": 155150, 
        "N_consv": 155150, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 200, 
            "corr_est_frag_len": 0.230813994215089, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.2182531, 
            "argmin_corr": 1500, 
            "min_corr": 0.1915334, 
            "NSC": 1.205085, 
            "RSC": 1.470101
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.524273699196
        }, 
        "rep1-pr1": {
            "FRiP": 0.501500762401
        }, 
        "rep1-pr2": {
            "FRiP": 0.50143821014
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.478596952198
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.156766295151, 
            "auc": 0.495583411249, 
            "ch_div": 0.1556369903, 
            "elbow_pt": 0.0, 
            "jsd": 0.775985813561, 
            "syn_auc": 0.496196564558, 
            "syn_elbow_pt": 0.389858866162, 
            "syn_jsd": 0.486794504811
        }
    ]
}
