{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 110582136, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 109484392, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 99.01, 
            "paired": 110582136, 
            "paired_qc_failed": 0, 
            "read1": 55291068, 
            "read1_qc_failed": 0, 
            "read2": 55291068, 
            "read2_qc_failed": 0, 
            "paired_properly": 108705670, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 98.3, 
            "with_itself": 109197945, 
            "with_itself_qc_failed": 0, 
            "singletons": 286447, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.26, 
            "diff_chroms": 284154, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 334658014, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 328702336, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.22, 
            "paired": 334658014, 
            "paired_qc_failed": 0, 
            "read1": 167329007, 
            "read1_qc_failed": 0, 
            "read2": 167329007, 
            "read2_qc_failed": 0, 
            "paired_properly": 320102484, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 95.65, 
            "with_itself": 326658529, 
            "with_itself_qc_failed": 0, 
            "singletons": 2043807, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.61, 
            "diff_chroms": 620372, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 50056527, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 1115769, 
            "paired_opt_dupes": 5811, 
            "dupes_pct": 0.02229
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 141663705, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 1830718, 
            "paired_opt_dupes": 10233, 
            "dupes_pct": 0.012923
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 50023163, 
            "distinct_read_pairs": 48908322, 
            "one_read_pair": 47814503, 
            "two_read_pair": 1073151, 
            "NRF": 0.977714, 
            "PBC1": 0.977635, 
            "PBC2": 44.555242
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 141095473, 
            "distinct_read_pairs": 139340732, 
            "one_read_pair": 137631421, 
            "two_read_pair": 1682298, 
            "NRF": 0.987563, 
            "PBC1": 0.987733, 
            "PBC2": 81.811558
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 97881516, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 97881516, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 97881516, 
            "paired_qc_failed": 0, 
            "read1": 48940758, 
            "read1_qc_failed": 0, 
            "read2": 48940758, 
            "read2_qc_failed": 0, 
            "paired_properly": 97881516, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 97881516, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 279665974, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 279665974, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 279665974, 
            "paired_qc_failed": 0, 
            "read1": 139832987, 
            "read1_qc_failed": 0, 
            "read2": 139832987, 
            "read2_qc_failed": 0, 
            "paired_properly": 279665974, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 279665974, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 156413, 
        "Np": 0, 
        "N_opt": 156413, 
        "N_consv": 156413, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 195, 
            "corr_est_frag_len": 0.213756667782881, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.2092172, 
            "argmin_corr": 1500, 
            "min_corr": 0.1871287, 
            "NSC": 1.142297, 
            "RSC": 1.205513
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.47154103958
        }, 
        "rep1-pr1": {
            "FRiP": 0.445582492076
        }, 
        "rep1-pr2": {
            "FRiP": 0.445910452622
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.422382871774
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.187667874791, 
            "auc": 0.495881025258, 
            "ch_div": 0.118814968815, 
            "elbow_pt": 0.0, 
            "jsd": 0.754263953302, 
            "syn_auc": 0.496745891836, 
            "syn_elbow_pt": 0.366421489185, 
            "syn_jsd": 0.444441940469
        }
    ]
}
