{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 91002742, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 90085604, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.99, 
            "paired": 91002742, 
            "paired_qc_failed": 0, 
            "read1": 45501371, 
            "read1_qc_failed": 0, 
            "read2": 45501371, 
            "read2_qc_failed": 0, 
            "paired_properly": 89635838, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 98.5, 
            "with_itself": 89883285, 
            "with_itself_qc_failed": 0, 
            "singletons": 202319, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.22, 
            "diff_chroms": 109737, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 334658014, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 328702336, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.22, 
            "paired": 334658014, 
            "paired_qc_failed": 0, 
            "read1": 167329007, 
            "read1_qc_failed": 0, 
            "read2": 167329007, 
            "read2_qc_failed": 0, 
            "paired_properly": 320102484, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 95.65, 
            "with_itself": 326658529, 
            "with_itself_qc_failed": 0, 
            "singletons": 2043807, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.61, 
            "diff_chroms": 620372, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 41289477, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 16633030, 
            "paired_opt_dupes": 3924, 
            "dupes_pct": 0.402839
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 141663705, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 1830718, 
            "paired_opt_dupes": 10233, 
            "dupes_pct": 0.012923
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 41238668, 
            "distinct_read_pairs": 24626057, 
            "one_read_pair": 14180855, 
            "two_read_pair": 6334145, 
            "NRF": 0.597159, 
            "PBC1": 0.575848, 
            "PBC2": 2.238795
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 141095473, 
            "distinct_read_pairs": 139340732, 
            "one_read_pair": 137631421, 
            "two_read_pair": 1682298, 
            "NRF": 0.987563, 
            "PBC1": 0.987733, 
            "PBC2": 81.811558
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 49312894, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 49312894, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 49312894, 
            "paired_qc_failed": 0, 
            "read1": 24656447, 
            "read1_qc_failed": 0, 
            "read2": 24656447, 
            "read2_qc_failed": 0, 
            "paired_properly": 49312894, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 49312894, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 279665974, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 279665974, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 279665974, 
            "paired_qc_failed": 0, 
            "read1": 139832987, 
            "read1_qc_failed": 0, 
            "read2": 139832987, 
            "read2_qc_failed": 0, 
            "paired_properly": 279665974, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 279665974, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 115452, 
        "Np": 0, 
        "N_opt": 115452, 
        "N_consv": 115452, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 225, 
            "corr_est_frag_len": 0.179214585795165, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.1712572, 
            "argmin_corr": 1500, 
            "min_corr": 0.1579181, 
            "NSC": 1.134858, 
            "RSC": 1.596545
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.428113478797
        }, 
        "rep1-pr1": {
            "FRiP": 0.408736978837
        }, 
        "rep1-pr2": {
            "FRiP": 0.409263689826
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.368944581194
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.186153513163, 
            "auc": 0.494198818936, 
            "ch_div": 0.15863785383, 
            "elbow_pt": 6.54374688321e-255, 
            "jsd": 0.727154965617, 
            "syn_auc": 0.500022657597, 
            "syn_elbow_pt": 0.347463783683, 
            "syn_jsd": 0.425046760426
        }
    ]
}