{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 47295234, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 46436490, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.18, 
            "paired": 47295234, 
            "paired_qc_failed": 0, 
            "read1": 23647617, 
            "read1_qc_failed": 0, 
            "read2": 23647617, 
            "read2_qc_failed": 0, 
            "paired_properly": 45792849, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 96.82, 
            "with_itself": 46067763, 
            "with_itself_qc_failed": 0, 
            "singletons": 368727, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.78, 
            "diff_chroms": 150500, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 148269018, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 143500908, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 96.78, 
            "paired": 148269018, 
            "paired_qc_failed": 0, 
            "read1": 74134509, 
            "read1_qc_failed": 0, 
            "read2": 74134509, 
            "read2_qc_failed": 0, 
            "paired_properly": 140225987, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 94.58, 
            "with_itself": 141622671, 
            "with_itself_qc_failed": 0, 
            "singletons": 1878237, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 1.27, 
            "diff_chroms": 652729, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 20005651, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 74926, 
            "paired_opt_dupes": 4021, 
            "dupes_pct": 0.003745
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 59090669, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 523701, 
            "paired_opt_dupes": 14446, 
            "dupes_pct": 0.008863
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 20001825, 
            "distinct_read_pairs": 19926920, 
            "one_read_pair": 19852268, 
            "two_read_pair": 74400, 
            "NRF": 0.996255, 
            "PBC1": 0.996254, 
            "PBC2": 266.831559
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 57674075, 
            "distinct_read_pairs": 57472830, 
            "one_read_pair": 57272993, 
            "two_read_pair": 198503, 
            "NRF": 0.996511, 
            "PBC1": 0.996523, 
            "PBC2": 288.524571
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 39861450, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 39861450, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 39861450, 
            "paired_qc_failed": 0, 
            "read1": 19930725, 
            "read1_qc_failed": 0, 
            "read2": 19930725, 
            "read2_qc_failed": 0, 
            "paired_properly": 39861450, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 39861450, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 117133936, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 117133936, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 117133936, 
            "paired_qc_failed": 0, 
            "read1": 58566968, 
            "read1_qc_failed": 0, 
            "read2": 58566968, 
            "read2_qc_failed": 0, 
            "paired_properly": 117133936, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 117133936, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 90075, 
        "Np": 0, 
        "N_opt": 90075, 
        "N_consv": 90075, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 140, 
            "corr_est_frag_len": 0.220635974270927, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.2200815, 
            "argmin_corr": 1500, 
            "min_corr": 0.1888039, 
            "NSC": 1.168599, 
            "RSC": 1.017727
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.375668567947
        }, 
        "rep1-pr1": {
            "FRiP": 0.381067370171
        }, 
        "rep1-pr2": {
            "FRiP": 0.38101181718
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.329139576011
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.1821207936, 
            "auc": 0.493556290384, 
            "ch_div": 0.189203724177, 
            "elbow_pt": 2.61668320142e-206, 
            "jsd": 0.722262095879, 
            "syn_auc": 0.50220736566, 
            "syn_elbow_pt": 0.331786639284, 
            "syn_jsd": 0.425908718465
        }
    ]
}
