{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 51600176, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 50608033, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.08, 
            "paired": 51600176, 
            "paired_qc_failed": 0, 
            "read1": 25800088, 
            "read1_qc_failed": 0, 
            "read2": 25800088, 
            "read2_qc_failed": 0, 
            "paired_properly": 50219556, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 97.32, 
            "with_itself": 50431901, 
            "with_itself_qc_failed": 0, 
            "singletons": 176132, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.34, 
            "diff_chroms": 83339, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 193594802, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 187969057, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 97.09, 
            "paired": 193594802, 
            "paired_qc_failed": 0, 
            "read1": 96797401, 
            "read1_qc_failed": 0, 
            "read2": 96797401, 
            "read2_qc_failed": 0, 
            "paired_properly": 184287983, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 95.19, 
            "with_itself": 185784698, 
            "with_itself_qc_failed": 0, 
            "singletons": 2184359, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 1.13, 
            "diff_chroms": 610670, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 22404399, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 506807, 
            "paired_opt_dupes": 4409, 
            "dupes_pct": 0.022621
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 78211821, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 539110, 
            "paired_opt_dupes": 19807, 
            "dupes_pct": 0.006893
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 22340492, 
            "distinct_read_pairs": 21836097, 
            "one_read_pair": 21341522, 
            "two_read_pair": 484937, 
            "NRF": 0.977422, 
            "PBC1": 0.977351, 
            "PBC2": 44.008855
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 77646644, 
            "distinct_read_pairs": 77172156, 
            "one_read_pair": 76701136, 
            "two_read_pair": 467668, 
            "NRF": 0.993889, 
            "PBC1": 0.993897, 
            "PBC2": 164.007664
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 43795184, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 43795184, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 43795184, 
            "paired_qc_failed": 0, 
            "read1": 21897592, 
            "read1_qc_failed": 0, 
            "read2": 21897592, 
            "read2_qc_failed": 0, 
            "paired_properly": 43795184, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 43795184, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 155345422, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 155345422, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 155345422, 
            "paired_qc_failed": 0, 
            "read1": 77672711, 
            "read1_qc_failed": 0, 
            "read2": 77672711, 
            "read2_qc_failed": 0, 
            "paired_properly": 155345422, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 155345422, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 90527, 
        "Np": 0, 
        "N_opt": 90527, 
        "N_consv": 90527, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 210, 
            "corr_est_frag_len": 0.190659914583525, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.2016008, 
            "argmin_corr": 1500, 
            "min_corr": 0.1790121, 
            "NSC": 1.065067, 
            "RSC": 0.5156495
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.304645216588
        }, 
        "rep1-pr1": {
            "FRiP": 0.297289744715
        }, 
        "rep1-pr2": {
            "FRiP": 0.297644276706
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.250396259002
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.223070051174, 
            "auc": 0.493838808507, 
            "ch_div": 0.143209861734, 
            "elbow_pt": 8.54977835825e-226, 
            "jsd": 0.66512727011, 
            "syn_auc": 0.502857186511, 
            "syn_elbow_pt": 0.252508752848, 
            "syn_jsd": 0.362754343319
        }
    ]
}
