/EXTERNAL CREST/mapping_coverage/K006455_1_lane_gembs
BACK
SAMPLE K006455_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
2142575522 |
100% |
155154569775 |
100% |
| Mapped |
2142575522 |
100.00 % |
155154569775 |
100.00 % |
| Passed |
1127715724 |
52.63 % |
125067918075 |
80.61 % |
| NotPassed |
1014859798 |
47.37 % |
30086651700 |
19.39 % |
| |
|
|
|
|
| LowMAPQ |
300866517 |
14.04 % |
30086651700 |
19.39 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
713993281 |
33.32 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
56583209300 |
100% |
| Passed |
51232436535 |
90.54 % |
| Trimmed |
2524203929 |
4.46 % |
| Clipped |
2152454004 |
3.80 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
674114832 |
1.19 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |