/EXTERNAL CREST/methylation/K006455_1_lane_gembs

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SAMPLE K006455_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25716158 17606595 68.47 %
NonRefCpG 355689 125374 35.25 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006455_1_lane_gembs_coverage_refCpG.png ./IMG//K006455_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006455_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006455_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006455_1_lane_gembs_quality_refcpg.png ./IMG//K006455_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006455_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6787816 13.56 % 4748748 12.20 % 167635 25.98 % 37908 11.29 %
Intermediate (0.3-0.7) 10281656 20.54 % 6916846 17.77 % 154196 23.90 % 67983 20.25 %
Methylated (0.7-1) 32985659 65.90 % 27261959 70.03 % 323336 50.12 % 229779 68.45 %
Median Methylation 0.810 0.830 0.700 0.830