/EXTERNAL CREST/mapping_coverage/K006452_1_lane_gembs
BACK
SAMPLE K006452_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
2460438402 |
100% |
179485869160 |
100% |
| Mapped |
2460438402 |
100.00 % |
179485869160 |
100.00 % |
| Passed |
1268093500 |
51.54 % |
143808883060 |
80.12 % |
| NotPassed |
1192344902 |
48.46 % |
35676986100 |
19.88 % |
| |
|
|
|
|
| LowMAPQ |
356769861 |
14.50 % |
35676986100 |
19.88 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
835575041 |
33.96 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
63625729100 |
100% |
| Passed |
57495920157 |
90.37 % |
| Trimmed |
2819204666 |
4.43 % |
| Clipped |
2536120639 |
3.99 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
774483638 |
1.22 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |