/EXTERNAL CREST/methylation/K006452_1_lane_gembs

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SAMPLE K006452_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25931323 18748278 72.30 %
NonRefCpG 325733 132875 40.79 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006452_1_lane_gembs_coverage_refCpG.png ./IMG//K006452_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006452_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006452_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006452_1_lane_gembs_quality_refcpg.png ./IMG//K006452_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006452_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7348186 14.50 % 5711105 13.97 % 140428 23.44 % 37581 10.97 %
Intermediate (0.3-0.7) 10407387 20.53 % 7397136 18.10 % 142362 23.76 % 70021 20.44 %
Methylated (0.7-1) 32925649 64.97 % 27768658 67.93 % 316286 52.80 % 234894 68.58 %
Median Methylation 0.810 0.820 0.720 0.820