/EXTERNAL CREST/mapping_coverage/K006462_1_lane_gembs
BACK
SAMPLE K006462_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1664564641 |
100% |
118722554124 |
100% |
| Mapped |
1664564641 |
100.00 % |
118722554124 |
100.00 % |
| Passed |
910292892 |
54.69 % |
93649673824 |
78.88 % |
| NotPassed |
754271749 |
45.31 % |
25072880300 |
21.12 % |
| |
|
|
|
|
| LowMAPQ |
250728803 |
15.06 % |
25072880300 |
21.12 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
503542946 |
30.25 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
45649273700 |
100% |
| Passed |
41415022730 |
90.72 % |
| Trimmed |
2030179086 |
4.45 % |
| Clipped |
1793871804 |
3.93 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
410200080 |
0.90 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |