/EXTERNAL CREST/methylation/K006462_1_lane_gembs

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SAMPLE K006462_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25413930 15741136 61.94 %
NonRefCpG 359054 102085 28.43 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006462_1_lane_gembs_coverage_refCpG.png ./IMG//K006462_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006462_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006462_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006462_1_lane_gembs_quality_refcpg.png ./IMG//K006462_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006462_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7869004 15.98 % 5414265 15.10 % 183272 28.39 % 36641 12.83 %
Intermediate (0.3-0.7) 11868506 24.11 % 7346107 20.49 % 174872 27.09 % 65605 22.98 %
Methylated (0.7-1) 29493520 59.91 % 23099378 64.42 % 287463 44.53 % 183243 64.19 %
Median Methylation 0.770 0.800 0.630 0.800