/EXTERNAL CREST/mapping_coverage/K006456_1_lane_gembs
BACK
SAMPLE K006456_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
2554978838 |
100% |
186844515555 |
100% |
| Mapped |
2554978838 |
100.00 % |
186844515555 |
100.00 % |
| Passed |
1307261977 |
51.17 % |
150898301655 |
80.76 % |
| NotPassed |
1247716861 |
48.83 % |
35946213900 |
19.24 % |
| |
|
|
|
|
| LowMAPQ |
359462139 |
14.07 % |
35946213900 |
19.24 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
888254722 |
34.77 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
65596271400 |
100% |
| Passed |
59294455376 |
90.39 % |
| Trimmed |
2903318573 |
4.43 % |
| Clipped |
2655224392 |
4.05 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
743273059 |
1.13 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |